SNP Report

Basic Infomation

Name	rs17122920 dbSNP
Location	chr:12,48755642
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004746	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs10506276	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs10506277	1.00[CEU][hapmap]
rs10506278	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11830378	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs11834109	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17122918	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17122922	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17224674	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17224828	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17225198	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17225261	1.00[CEU][hapmap]
rs17225751	1.00[CEU][hapmap]
rs17226359	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17226506	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17226723	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17823193	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17823415	0.85[CEU][hapmap]
rs17823565	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs17824705	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17824989	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs17825013	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs55684363	0.96[EUR][1000 genomes]
rs55763362	0.86[EUR][1000 genomes]
rs55854069	0.96[EUR][1000 genomes]
rs55920439	0.91[EUR][1000 genomes]
rs56084718	0.93[EUR][1000 genomes]
rs56110736	0.91[EUR][1000 genomes]
rs56378318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56383074	0.93[EUR][1000 genomes]
rs56412095	0.93[EUR][1000 genomes]
rs59724592	1.00[EUR][1000 genomes]
rs725283	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7297558	0.85[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs7301153	0.85[CEU][hapmap]
rs7301509	0.85[CEU][hapmap]
rs7307874	0.85[CEU][hapmap]
rs7310935	0.85[CEU][hapmap]
rs751315	0.93[EUR][1000 genomes]
rs751316	0.93[EUR][1000 genomes]
rs7966782	0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000269282	Proximal transcriptional regulation
ENSG00000257763	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)