SNP Report
Basic Infomation
| Name | rs56378318 dbSNP |
|---|---|
| Location | chr:12,48768897 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506278 | 0.88[EUR][1000 genomes] |
| rs11834109 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17122918 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17122920 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17122922 | 0.94[AFR][1000 genomes] |
| rs17226359 | 0.88[EUR][1000 genomes] |
| rs17226506 | 0.88[EUR][1000 genomes] |
| rs17226723 | 0.91[EUR][1000 genomes] |
| rs17824705 | 0.86[EUR][1000 genomes] |
| rs17824989 | 0.91[EUR][1000 genomes] |
| rs17825013 | 0.91[EUR][1000 genomes] |
| rs55684363 | 1.00[EUR][1000 genomes] |
| rs55763362 | 0.86[EUR][1000 genomes] |
| rs55854069 | 1.00[EUR][1000 genomes] |
| rs55920439 | 0.91[EUR][1000 genomes] |
| rs56084718 | 0.89[EUR][1000 genomes] |
| rs56110736 | 0.91[EUR][1000 genomes] |
| rs56383074 | 0.89[EUR][1000 genomes] |
| rs56412095 | 0.89[EUR][1000 genomes] |
| rs59724592 | 0.96[EUR][1000 genomes] |
| rs725283 | 0.94[AFR][1000 genomes] |
| rs751315 | 0.89[EUR][1000 genomes] |
| rs751316 | 0.89[EUR][1000 genomes] |
| rs7966782 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF641 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014