SNP Report

Basic Infomation

Name	rs17533992 dbSNP
Location	chr:2,65561543
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11887325	1.00[CHD][hapmap]
rs13010364	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13011574	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13023210	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13029865	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13423881	1.00[CHD][hapmap]
rs13812	1.00[CHD][hapmap]
rs17475676	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17534034	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17534153	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17534885	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17704661	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2008312	1.00[CHD][hapmap]
rs34004859	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs34073446	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34422198	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34561152	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34665164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34723587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34820212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34826897	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34928603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35162271	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35205301	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35312858	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35315862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35749233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35837416	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35839181	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36044502	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36088876	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36188795	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62139093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62139118	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62139122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62139125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62139126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62139127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62139128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62141062	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62141068	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6546134	1.00[CHD][hapmap]
rs6546147	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs6704941	1.00[CHD][hapmap]
rs6727281	0.86[CEU][hapmap];1.00[CHD][hapmap];0.87[EUR][1000 genomes]
rs7583793	0.82[EUR][1000 genomes]
rs7589984	1.00[CHD][hapmap]
rs7590888	0.81[EUR][1000 genomes]
rs869548	1.00[CHD][hapmap]
rs874952	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9309369	1.00[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
SPRED2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)