SNP Report
Basic Infomation
| Name | rs6546147 dbSNP |
|---|---|
| Location | chr:2,65556341 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10165161 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11886456 | 0.87[ASN][1000 genomes] |
| rs13010364 | 0.83[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs13011574 | 0.82[EUR][1000 genomes] |
| rs13431750 | 1.00[ASN][1000 genomes] |
| rs17533992 | 0.83[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs17534034 | 0.80[EUR][1000 genomes] |
| rs17704661 | 0.80[EUR][1000 genomes] |
| rs34820212 | 0.82[EUR][1000 genomes] |
| rs35315862 | 0.82[EUR][1000 genomes] |
| rs35749233 | 0.82[EUR][1000 genomes] |
| rs61330787 | 1.00[ASN][1000 genomes] |
| rs61741513 | 1.00[ASN][1000 genomes] |
| rs61748094 | 1.00[ASN][1000 genomes] |
| rs62139093 | 0.86[EUR][1000 genomes] |
| rs62139118 | 0.82[EUR][1000 genomes] |
| rs62139122 | 0.80[EUR][1000 genomes] |
| rs6727281 | 0.92[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72894568 | 1.00[ASN][1000 genomes] |
| rs7590888 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014