SNP Report

Basic Infomation

Name	rs34004859 dbSNP
Location	chr:2,65663005
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11885144	0.91[EUR][1000 genomes]
rs11888514	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11899809	0.91[EUR][1000 genomes]
rs13011574	1.00[CHD][hapmap]
rs13013163	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13021038	0.83[AMR][1000 genomes]
rs13026856	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13032509	1.00[ASW][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13423881	1.00[CHD][hapmap]
rs13812	1.00[CHD][hapmap]
rs17533992	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs17534153	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs17535123	0.83[AMR][1000 genomes]
rs17535158	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17535617	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34191258	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34276619	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34288960	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34479540	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34635563	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34720345	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34723203	0.91[EUR][1000 genomes]
rs34875083	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35153344	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35165760	0.83[AMR][1000 genomes]
rs35339087	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35476092	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35490361	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35493230	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35518316	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35520113	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35528432	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35717079	0.91[EUR][1000 genomes]
rs35824125	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35974161	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36028876	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36044647	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36103180	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62141070	0.83[AMR][1000 genomes]
rs62141074	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62141109	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62141110	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62141113	0.90[EUR][1000 genomes]
rs62141114	0.93[EUR][1000 genomes]
rs62141117	0.91[EUR][1000 genomes]
rs62141120	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62141139	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6727281	1.00[CHD][hapmap]
rs71424182	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71424185	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74183104	0.87[EUR][1000 genomes]
rs874952	1.00[CHD][hapmap];0.81[TSI][hapmap]
rs9309374	0.88[EUR][1000 genomes]
rs9677304	0.91[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPRED2	Proximal transcriptional regulation
ENSG00000204929	Proximal transcriptional regulation
RAB1A	Distal transcriptional regulation
ACTR2	Distal transcriptional regulation
SPRED2	Distal transcriptional regulation
ENSG00000232693	Distal transcriptional regulation
PPP3R1	Distal transcriptional regulation
ENSG00000251900	Distal transcriptional regulation
MEIS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)