SNP Report
Basic Infomation
| Name | rs35493230 dbSNP |
|---|---|
| Location | chr:2,65660134 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 49)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11885144 | 0.95[EUR][1000 genomes] |
| rs11888514 | 0.95[EUR][1000 genomes] |
| rs11899809 | 0.95[EUR][1000 genomes] |
| rs13013163 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13021038 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs13026856 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13032509 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17535123 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17535158 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17535617 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34004859 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34191258 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34276619 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34288960 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34479540 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34635563 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34720345 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34723203 | 0.95[EUR][1000 genomes] |
| rs34875083 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34892599 | 0.84[EUR][1000 genomes] |
| rs35153344 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35165760 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35339087 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35476092 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35490361 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35518316 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35520113 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35528432 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35717079 | 0.95[EUR][1000 genomes] |
| rs35824125 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35910768 | 0.82[AMR][1000 genomes] |
| rs35974161 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs36028876 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs36044647 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36103180 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62141070 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62141074 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62141109 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62141110 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62141113 | 0.94[EUR][1000 genomes] |
| rs62141114 | 0.97[EUR][1000 genomes] |
| rs62141117 | 0.95[EUR][1000 genomes] |
| rs62141120 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62141139 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs71424182 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71424185 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs74183104 | 0.91[EUR][1000 genomes] |
| rs9309374 | 0.92[EUR][1000 genomes] |
| rs9677304 | 0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Proximal transcriptional regulation |
| ENSG00000204929 | Proximal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| SPRED2 | Distal transcriptional regulation |
| ENSG00000232693 | Distal transcriptional regulation |
| ENSG00000251900 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014