SNP Report

Basic Infomation

Name	rs17475676 dbSNP
Location	chr:2,65622144
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 76)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10165161	0.81[EUR][1000 genomes]
rs11687598	0.81[EUR][1000 genomes]
rs12623455	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs13010364	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13011574	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13013163	0.83[AFR][1000 genomes]
rs13021038	0.83[AFR][1000 genomes]
rs13022819	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs13023210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13026856	0.83[AFR][1000 genomes]
rs13029865	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13032509	0.83[AFR][1000 genomes]
rs17533992	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17534034	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17534153	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17534885	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17535123	0.83[AFR][1000 genomes]
rs17535158	0.83[AFR][1000 genomes]
rs17535617	0.83[AFR][1000 genomes]
rs17704661	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34073446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34191258	0.83[AFR][1000 genomes]
rs34276619	0.83[AFR][1000 genomes]
rs34288960	0.83[AFR][1000 genomes]
rs34422198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34479540	0.83[AFR][1000 genomes]
rs34561152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34635563	0.83[AFR][1000 genomes]
rs34665164	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34720345	0.83[AFR][1000 genomes]
rs34723587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34820212	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34826897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34875083	0.83[AFR][1000 genomes]
rs34892599	0.83[AFR][1000 genomes]
rs34928603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35153344	0.83[AFR][1000 genomes]
rs35162271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35165760	0.83[AFR][1000 genomes]
rs35205301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35312858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35315862	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35339087	0.83[AFR][1000 genomes]
rs35476092	0.83[AFR][1000 genomes]
rs35490361	0.83[AFR][1000 genomes]
rs35520113	0.83[AFR][1000 genomes]
rs35528432	0.83[AFR][1000 genomes]
rs35749233	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35824125	0.83[AFR][1000 genomes]
rs35837416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35839181	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35974161	0.83[AFR][1000 genomes]
rs36044502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36044647	0.83[AFR][1000 genomes]
rs36088876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36103180	0.83[AFR][1000 genomes]
rs36188795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3732102	0.82[EUR][1000 genomes]
rs59173238	0.82[EUR][1000 genomes]
rs62139093	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62139118	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62139122	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62139125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62139126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62139127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62139128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62141062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62141068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62141070	0.83[AFR][1000 genomes]
rs62141074	0.83[AFR][1000 genomes]
rs62141109	0.83[AFR][1000 genomes]
rs62141120	0.83[AFR][1000 genomes]
rs62141139	0.83[AFR][1000 genomes]
rs71424185	0.83[AFR][1000 genomes]
rs7590888	0.81[EUR][1000 genomes]
rs874952	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPRED2	Distal transcriptional regulation
SPRED2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)