SNP Report

Basic Infomation

Name	rs59173238 dbSNP
Location	chr:2,65613803
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11675191	0.98[ASN][1000 genomes]
rs11675951	0.95[ASN][1000 genomes]
rs11680063	0.95[ASN][1000 genomes]
rs11680067	0.95[ASN][1000 genomes]
rs11683330	1.00[ASN][1000 genomes]
rs11683864	1.00[ASN][1000 genomes]
rs11684759	1.00[ASN][1000 genomes]
rs11684956	0.95[ASN][1000 genomes]
rs11687003	0.95[ASN][1000 genomes]
rs11687535	0.95[ASN][1000 genomes]
rs11687598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11688093	0.95[ASN][1000 genomes]
rs11693719	0.95[ASN][1000 genomes]
rs11694196	0.96[ASN][1000 genomes]
rs11694684	0.95[ASN][1000 genomes]
rs11695503	0.95[ASN][1000 genomes]
rs12623455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13022819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13023210	0.82[EUR][1000 genomes]
rs13029865	0.82[EUR][1000 genomes]
rs17030202	0.95[ASN][1000 genomes]
rs17030204	0.95[ASN][1000 genomes]
rs17475676	0.82[EUR][1000 genomes]
rs17534153	0.81[EUR][1000 genomes]
rs17534885	0.82[EUR][1000 genomes]
rs2196606	0.95[ASN][1000 genomes]
rs2217969	0.95[ASN][1000 genomes]
rs268120	0.95[ASN][1000 genomes]
rs268134	0.95[ASN][1000 genomes]
rs268135	0.95[ASN][1000 genomes]
rs268140	0.95[ASN][1000 genomes]
rs34073446	0.82[EUR][1000 genomes]
rs34158596	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34422198	0.80[EUR][1000 genomes]
rs34561152	0.82[EUR][1000 genomes]
rs34665164	0.81[EUR][1000 genomes]
rs34723587	0.82[EUR][1000 genomes]
rs34826897	0.82[EUR][1000 genomes]
rs34928603	0.82[EUR][1000 genomes]
rs35162271	0.82[EUR][1000 genomes]
rs35205301	0.82[EUR][1000 genomes]
rs35312858	0.82[EUR][1000 genomes]
rs35493937	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35708784	0.95[ASN][1000 genomes]
rs35837416	0.82[EUR][1000 genomes]
rs35839181	0.81[EUR][1000 genomes]
rs36044502	0.82[EUR][1000 genomes]
rs36088876	0.82[EUR][1000 genomes]
rs36188795	0.81[EUR][1000 genomes]
rs3732102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57783331	0.95[ASN][1000 genomes]
rs58522699	0.95[ASN][1000 genomes]
rs58921877	0.95[ASN][1000 genomes]
rs60232138	0.95[ASN][1000 genomes]
rs62139125	0.82[EUR][1000 genomes]
rs62139126	0.82[EUR][1000 genomes]
rs62139127	0.82[EUR][1000 genomes]
rs62139128	0.82[EUR][1000 genomes]
rs62141062	0.82[EUR][1000 genomes]
rs62141068	0.82[EUR][1000 genomes]
rs67039819	1.00[ASN][1000 genomes]
rs67212621	0.95[ASN][1000 genomes]
rs67414048	1.00[ASN][1000 genomes]
rs67510179	0.95[ASN][1000 genomes]
rs67599251	0.95[ASN][1000 genomes]
rs67646506	0.95[ASN][1000 genomes]
rs67725501	0.95[ASN][1000 genomes]
rs68138365	1.00[ASN][1000 genomes]
rs68143128	0.95[ASN][1000 genomes]
rs72824316	0.94[ASN][1000 genomes]
rs72894569	0.95[ASN][1000 genomes]
rs7583793	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs874952	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPRED2	Distal transcriptional regulation
SPRED2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)