SNP Report
Basic Infomation
| Name | rs62139127 dbSNP |
|---|---|
| Location | chr:2,65603437 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10165161 | 0.81[EUR][1000 genomes] |
| rs11687598 | 0.81[EUR][1000 genomes] |
| rs12623455 | 0.82[EUR][1000 genomes] |
| rs13010364 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13011574 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13022819 | 0.82[EUR][1000 genomes] |
| rs13023210 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13029865 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17475676 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17533992 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17534034 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17534153 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17534885 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17704661 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34073446 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34422198 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs34561152 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34665164 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34723587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34820212 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34826897 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34928603 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35162271 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35205301 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35312858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35315862 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35749233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35837416 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35839181 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs36044502 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36088876 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36188795 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3732102 | 0.82[EUR][1000 genomes] |
| rs59173238 | 0.82[EUR][1000 genomes] |
| rs62139093 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62139118 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62139122 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62139125 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62139126 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62139128 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62141062 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62141068 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7590888 | 0.81[EUR][1000 genomes] |
| rs874952 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| ENSG00000204929 | Distal transcriptional regulation |
| ENSG00000232693 | RNA binding protein mediated regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014