SNP Report
Basic Infomation
| Name | rs174579 dbSNP |
|---|---|
| Location | chr:11,61605613 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs108499 | 0.81[MKK][hapmap] |
| rs174534 | 1.00[YRI][hapmap] |
| rs174538 | 1.00[YRI][hapmap] |
| rs174570 | 1.00[YRI][hapmap] |
| rs174572 | 0.87[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs174573 | 0.87[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs174575 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs174582 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174585 | 0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs174587 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs174589 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs174590 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs174591 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs174593 | 0.83[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs174595 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs174597 | 0.81[CEU][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs174605 | 1.00[YRI][hapmap] |
| rs174611 | 1.00[YRI][hapmap] |
| rs17831757 | 1.00[YRI][hapmap] |
| rs695867 | 1.00[YRI][hapmap] |
| rs93923 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs968567 | 0.90[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS2 | Proximal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014