SNP Report
Basic Infomation
| Name | rs174611 dbSNP |
|---|---|
| Location | chr:11,61627881 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174534 | 1.00[YRI][hapmap] |
| rs174538 | 1.00[YRI][hapmap] |
| rs174570 | 1.00[YRI][hapmap] |
| rs174579 | 1.00[YRI][hapmap] |
| rs174585 | 1.00[YRI][hapmap] |
| rs174589 | 1.00[YRI][hapmap] |
| rs174605 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174607 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174608 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174618 | 1.00[CHD][hapmap] |
| rs17831757 | 1.00[YRI][hapmap] |
| rs422249 | 0.83[CEU][hapmap] |
| rs695867 | 1.00[YRI][hapmap] |
| rs7104849 | 1.00[CHD][hapmap] |
| rs7482316 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS2 | Proximal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014