SNP Report
Basic Infomation
| Name | rs174618 dbSNP |
|---|---|
| Location | chr:11,61629322 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174606 | 0.85[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs174609 | 0.87[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs174610 | 0.91[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs174611 | 1.00[CHD][hapmap] |
| rs174612 | 0.91[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs174613 | 0.87[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs174614 | 0.87[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs174616 | 0.92[CEU][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs174617 | 0.85[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs174620 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs174623 | 0.83[EUR][1000 genomes] |
| rs174625 | 0.85[EUR][1000 genomes] |
| rs174626 | 0.84[CEU][hapmap];0.90[MKK][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs7104849 | 1.00[CHD][hapmap] |
| rs7482316 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS2 | Proximal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014