SNP Report
Basic Infomation
| Name | rs7482316 dbSNP |
|---|---|
| Location | chr:11,61640198 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230815 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11230816 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230817 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11539526 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174611 | 1.00[CHD][hapmap] |
| rs174618 | 1.00[CHD][hapmap] |
| rs17764324 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17764935 | 1.00[CHB][hapmap] |
| rs17831757 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6591663 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6591664 | 0.97[EUR][1000 genomes] |
| rs7104849 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7113119 | 1.00[YRI][hapmap] |
| rs7394459 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7481842 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| PRPF4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014