SNP Report
Basic Infomation
| Name | rs6591664 dbSNP |
|---|---|
| Location | chr:11,61640521 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230815 | 0.81[EUR][1000 genomes] |
| rs11230816 | 0.94[EUR][1000 genomes] |
| rs11230817 | 0.94[EUR][1000 genomes] |
| rs11539526 | 0.90[EUR][1000 genomes] |
| rs11539527 | 0.83[ASN][1000 genomes] |
| rs17156506 | 0.83[ASN][1000 genomes] |
| rs17156516 | 0.83[ASN][1000 genomes] |
| rs17764324 | 0.89[EUR][1000 genomes] |
| rs17831757 | 0.87[EUR][1000 genomes] |
| rs6591663 | 0.89[EUR][1000 genomes] |
| rs7104849 | 0.92[EUR][1000 genomes] |
| rs73489327 | 0.83[ASN][1000 genomes] |
| rs7394459 | 0.92[EUR][1000 genomes] |
| rs7481842 | 0.96[EUR][1000 genomes] |
| rs7482316 | 0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014