SNP Report
Basic Infomation
| Name | rs17156506 dbSNP |
|---|---|
| Location | chr:11,61632913 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10750961 | 1.00[EUR][1000 genomes] |
| rs10750962 | 1.00[EUR][1000 genomes] |
| rs10792323 | 1.00[EUR][1000 genomes] |
| rs11230861 | 1.00[EUR][1000 genomes] |
| rs11539527 | 1.00[ASN][1000 genomes] |
| rs12280359 | 1.00[EUR][1000 genomes] |
| rs12290643 | 1.00[EUR][1000 genomes] |
| rs12292968 | 1.00[EUR][1000 genomes] |
| rs17156469 | 1.00[EUR][1000 genomes] |
| rs17156516 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1805140 | 1.00[EUR][1000 genomes] |
| rs185451 | 1.00[EUR][1000 genomes] |
| rs2458316 | 1.00[EUR][1000 genomes] |
| rs259868 | 1.00[EUR][1000 genomes] |
| rs259870 | 1.00[EUR][1000 genomes] |
| rs2611758 | 1.00[EUR][1000 genomes] |
| rs2611766 | 1.00[EUR][1000 genomes] |
| rs2611767 | 1.00[EUR][1000 genomes] |
| rs2668896 | 1.00[EUR][1000 genomes] |
| rs2926518 | 1.00[EUR][1000 genomes] |
| rs2926519 | 1.00[EUR][1000 genomes] |
| rs2955682 | 1.00[EUR][1000 genomes] |
| rs2955685 | 1.00[EUR][1000 genomes] |
| rs368878 | 1.00[EUR][1000 genomes] |
| rs371297 | 1.00[EUR][1000 genomes] |
| rs380361 | 1.00[EUR][1000 genomes] |
| rs3972399 | 1.00[EUR][1000 genomes] |
| rs401726 | 1.00[EUR][1000 genomes] |
| rs409771 | 1.00[EUR][1000 genomes] |
| rs410136 | 1.00[EUR][1000 genomes] |
| rs413484 | 1.00[EUR][1000 genomes] |
| rs422249 | 0.83[CHD][hapmap] |
| rs426843 | 1.00[EUR][1000 genomes] |
| rs437600 | 1.00[EUR][1000 genomes] |
| rs450709 | 1.00[EUR][1000 genomes] |
| rs4963280 | 1.00[EUR][1000 genomes] |
| rs518511 | 0.95[ASN][1000 genomes] |
| rs58048250 | 1.00[EUR][1000 genomes] |
| rs58473786 | 1.00[EUR][1000 genomes] |
| rs59522631 | 0.95[ASN][1000 genomes] |
| rs61413106 | 1.00[EUR][1000 genomes] |
| rs639394 | 0.95[ASN][1000 genomes] |
| rs654226 | 1.00[EUR][1000 genomes] |
| rs6591664 | 0.83[ASN][1000 genomes] |
| rs7107586 | 1.00[EUR][1000 genomes] |
| rs7116842 | 1.00[EUR][1000 genomes] |
| rs7119878 | 1.00[EUR][1000 genomes] |
| rs7125519 | 1.00[EUR][1000 genomes] |
| rs73489306 | 0.95[ASN][1000 genomes] |
| rs73489307 | 0.95[ASN][1000 genomes] |
| rs73489308 | 0.95[ASN][1000 genomes] |
| rs73489311 | 0.95[ASN][1000 genomes] |
| rs73489327 | 1.00[ASN][1000 genomes] |
| rs73491300 | 1.00[EUR][1000 genomes] |
| rs7927548 | 1.00[JPT][hapmap] |
| rs7948784 | 1.00[EUR][1000 genomes] |
| rs7949588 | 1.00[EUR][1000 genomes] |
| rs907637 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS1 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014