SNP Report
Basic Infomation
| Name | rs639394 dbSNP |
|---|---|
| Location | chr:11,61631331 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11539527 | 0.95[ASN][1000 genomes] |
| rs17156506 | 0.95[ASN][1000 genomes] |
| rs17156516 | 0.95[ASN][1000 genomes] |
| rs3741 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs472031 | 0.92[EUR][1000 genomes] |
| rs482548 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs500850 | 0.97[EUR][1000 genomes] |
| rs508768 | 0.89[EUR][1000 genomes] |
| rs518511 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs520298 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs546747 | 0.90[EUR][1000 genomes] |
| rs562172 | 0.95[EUR][1000 genomes] |
| rs59522631 | 1.00[ASN][1000 genomes] |
| rs73489306 | 1.00[ASN][1000 genomes] |
| rs73489307 | 1.00[ASN][1000 genomes] |
| rs73489308 | 1.00[ASN][1000 genomes] |
| rs73489311 | 1.00[ASN][1000 genomes] |
| rs73489327 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS2 | Proximal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014