SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2524290	1.00[ASW][hapmap]
rs3741	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs472031	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs500850	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs508768	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs518511	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs520298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs546747	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs562172	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs628993	1.00[ASW][hapmap]
rs639394	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
FADS2	Proximal transcriptional regulation
FADS1	Distal transcriptional regulation
ENSG00000256914	Distal transcriptional regulation
MIR1908	Distal transcriptional regulation
FADS2	Distal transcriptional regulation
MIR611	Distal transcriptional regulation
TMEM258	Distal transcriptional regulation
FEN1	Distal transcriptional regulation
FADS2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)