SNP Report
Basic Infomation
| Name | rs968567 dbSNP |
|---|---|
| Location | chr:11,61595564 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174579 | 0.90[GIH][hapmap] |
| rs61896141 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61897793 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs61897795 | 0.80[AMR][1000 genomes] |
| rs7943728 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS2 | Proximal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| ZBTB4 | Distal transcriptional regulation |
| POLR2A | Distal transcriptional regulation |
| ZBTB21 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
| FADS1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014