SNP Report
Basic Infomation
| Name | rs174575 dbSNP |
|---|---|
| Location | chr:11,61602003 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174572 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs174573 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs174576 | 0.88[YRI][hapmap] |
| rs174579 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs174582 | 0.89[ASN][1000 genomes] |
| rs174585 | 0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs174587 | 0.81[ASN][1000 genomes] |
| rs174589 | 0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs174590 | 0.84[ASN][1000 genomes] |
| rs174591 | 0.87[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs174593 | 0.88[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs174595 | 0.84[ASN][1000 genomes] |
| rs174597 | 0.82[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs93923 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| NAP1L4 | Distal transcriptional regulation |
| FADS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014