SNP Report
Basic Infomation
| Name | rs174455 dbSNP |
|---|---|
| Location | chr:11,61656117 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1000778 | 0.80[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap] |
| rs1295988 | 0.80[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap] |
| rs149803 | 1.00[YRI][hapmap] |
| rs174448 | 0.84[CEU][hapmap];0.83[TSI][hapmap] |
| rs174449 | 0.84[CEU][hapmap];0.88[TSI][hapmap] |
| rs174454 | 0.85[JPT][hapmap] |
| rs174456 | 0.80[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap] |
| rs174458 | 0.81[AMR][1000 genomes] |
| rs174460 | 0.80[CEU][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes] |
| rs174464 | 0.88[GIH][hapmap];0.90[JPT][hapmap] |
| rs174465 | 0.84[AMR][1000 genomes] |
| rs174468 | 1.00[YRI][hapmap] |
| rs174469 | 0.81[JPT][hapmap] |
| rs174476 | 1.00[YRI][hapmap] |
| rs174532 | 1.00[LWK][hapmap] |
| rs174634 | 0.85[JPT][hapmap] |
| rs198421 | 1.00[LWK][hapmap] |
| rs3815045 | 0.81[JPT][hapmap] |
| rs422249 | 0.80[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS3 | Proximal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| FADS3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014