SNP Report
Basic Infomation
| Name | rs3815045 dbSNP |
|---|---|
| Location | chr:11,61669946 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1000778 | 0.82[JPT][hapmap] |
| rs1151139 | 0.83[ASN][1000 genomes] |
| rs1295988 | 0.82[JPT][hapmap] |
| rs17156609 | 1.00[MKK][hapmap] |
| rs174454 | 0.86[JPT][hapmap] |
| rs174455 | 0.81[JPT][hapmap] |
| rs174456 | 0.82[JPT][hapmap] |
| rs174460 | 0.81[JPT][hapmap] |
| rs174464 | 0.82[JPT][hapmap] |
| rs174469 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs174470 | 1.00[ASN][1000 genomes] |
| rs174473 | 0.88[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs174474 | 0.92[ASN][1000 genomes] |
| rs174479 | 0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs174634 | 0.86[JPT][hapmap] |
| rs528285 | 0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAB3IL1 | Proximal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| BEST1 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| RAB3IL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014