SNP Report
Basic Infomation
| Name | rs174460 dbSNP |
|---|---|
| Location | chr:11,61657110 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1000778 | 0.92[ASW][hapmap];0.83[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1151144 | 0.88[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1295988 | 0.92[ASW][hapmap];0.83[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs174453 | 0.83[ASN][1000 genomes] |
| rs174454 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.91[ASN][1000 genomes] |
| rs174455 | 0.80[CEU][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes] |
| rs174456 | 0.92[ASW][hapmap];0.83[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs174457 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174458 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174459 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174461 | 0.87[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174462 | 0.94[ASN][1000 genomes] |
| rs174463 | 0.87[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174464 | 0.92[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs174465 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs174466 | 0.94[ASN][1000 genomes] |
| rs174469 | 0.81[JPT][hapmap] |
| rs174634 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs174635 | 0.85[ASN][1000 genomes] |
| rs3815045 | 0.81[JPT][hapmap] |
| rs693672 | 0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS3 | Proximal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014