SNP Report
Basic Infomation
| Name | rs174469 dbSNP |
|---|---|
| Location | chr:11,61667443 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1000778 | 0.82[JPT][hapmap] |
| rs1151139 | 0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1295988 | 0.82[JPT][hapmap] |
| rs174454 | 0.86[JPT][hapmap] |
| rs174455 | 0.81[JPT][hapmap] |
| rs174456 | 0.82[JPT][hapmap] |
| rs174460 | 0.81[JPT][hapmap] |
| rs174462 | 0.81[EUR][1000 genomes] |
| rs174464 | 0.82[JPT][hapmap] |
| rs174470 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs174473 | 0.84[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes] |
| rs174474 | 0.95[ASN][1000 genomes] |
| rs174479 | 0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs174634 | 0.86[JPT][hapmap] |
| rs3815045 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs528285 | 0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAB3IL1 | Proximal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| INCENP | Distal transcriptional regulation |
| BEST1 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| ENSG00000256428 | Distal transcriptional regulation |
| RAB3IL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014