SNP Report
Basic Infomation
| Name | rs198421 dbSNP |
|---|---|
| Location | chr:11,61518237 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12365888 | 1.00[ASN][1000 genomes] |
| rs12806760 | 1.00[YRI][hapmap] |
| rs149803 | 1.00[ASN][1000 genomes] |
| rs174455 | 1.00[LWK][hapmap] |
| rs174467 | 1.00[ASN][1000 genomes] |
| rs174480 | 1.00[ASN][1000 genomes] |
| rs174532 | 1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs198459 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2975556 | 1.00[ASN][1000 genomes] |
| rs412334 | 1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs414633 | 1.00[ASN][1000 genomes] |
| rs56188017 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000124915 | Proximal transcriptional regulation |
| MYRF | Proximal transcriptional regulation |
| MYRF | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| ENSG00000256428 | Distal transcriptional regulation |
| ENSG00000124915 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014