SNP Report
Basic Infomation
| Name | rs174449 dbSNP |
|---|---|
| Location | chr:11,61640379 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs174448 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs174455 | 0.84[CEU][hapmap];0.88[TSI][hapmap] |
| rs174616 | 0.85[JPT][hapmap];0.84[MEX][hapmap] |
| rs174623 | 0.86[ASN][1000 genomes] |
| rs174626 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.89[MEX][hapmap];0.87[ASN][1000 genomes] |
| rs422249 | 0.92[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014