SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509089	1.00[CEU][hapmap]
rs12250046	1.00[CEU][hapmap]
rs1339587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1625716	0.88[AFR][1000 genomes]
rs16851	1.00[CEU][hapmap]
rs16912160	1.00[CEU][hapmap]
rs16912171	1.00[CEU][hapmap]
rs16912172	1.00[CEU][hapmap]
rs16912173	1.00[CEU][hapmap]
rs16912174	1.00[CEU][hapmap]
rs1698473	0.86[AFR][1000 genomes]
rs1856565	1.00[CEU][hapmap]
rs2225987	1.00[AMR][1000 genomes]
rs2440859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2486478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590309	0.84[AFR][1000 genomes]
rs2590312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590314	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2590346	1.00[AMR][1000 genomes]
rs2590347	1.00[AMR][1000 genomes]
rs2590350	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2590362	1.00[CEU][hapmap]
rs2790225	0.84[AFR][1000 genomes]
rs2790229	1.00[EUR][1000 genomes]
rs2790232	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790234	0.84[AFR][1000 genomes]
rs2790243	1.00[CEU][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58706444	0.82[AFR][1000 genomes]
rs7907716	1.00[CEU][hapmap]
rs7907725	1.00[CEU][hapmap]
rs9416678	0.84[AFR][1000 genomes]
rs946555	1.00[CEU][hapmap]
rs9663811	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CISD1	Distal transcriptional regulation
IPMK	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)