SNP Report
Basic Infomation
| Name | rs1339587 dbSNP |
|---|---|
| Location | chr:10,59978905 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509089 | 1.00[CEU][hapmap] |
| rs12250046 | 1.00[CEU][hapmap] |
| rs1339581 | 1.00[AMR][1000 genomes] |
| rs1619597 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs16851 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes] |
| rs16912160 | 1.00[CEU][hapmap] |
| rs16912171 | 1.00[CEU][hapmap] |
| rs16912172 | 1.00[CEU][hapmap] |
| rs16912173 | 1.00[CEU][hapmap] |
| rs16912174 | 1.00[CEU][hapmap] |
| rs1856565 | 1.00[CEU][hapmap] |
| rs2440852 | 0.87[AMR][1000 genomes] |
| rs2440859 | 1.00[EUR][1000 genomes] |
| rs2486478 | 1.00[EUR][1000 genomes] |
| rs2486485 | 1.00[AMR][1000 genomes] |
| rs2590312 | 1.00[EUR][1000 genomes] |
| rs2590314 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs2590345 | 1.00[AMR][1000 genomes] |
| rs2590350 | 1.00[CEU][hapmap] |
| rs2590362 | 1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes] |
| rs2790171 | 0.89[AMR][1000 genomes] |
| rs2790229 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2790232 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs2790243 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7907716 | 1.00[CEU][hapmap] |
| rs7907725 | 1.00[CEU][hapmap] |
| rs946555 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9663811 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IPMK | Distal transcriptional regulation |
| CISD1 | Distal transcriptional regulation |
| IPMK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014