SNP Report

Basic Infomation

Name	rs10509089 dbSNP
Location	chr:10,60106237
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12250046	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1339581	0.94[EUR][1000 genomes]
rs1339587	1.00[CEU][hapmap]
rs1619597	1.00[CEU][hapmap]
rs16851	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16912155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912160	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912171	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912172	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16912173	1.00[CEU][hapmap]
rs16912174	1.00[CEU][hapmap]
rs1856565	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2225987	0.94[EUR][1000 genomes]
rs2440852	0.94[EUR][1000 genomes]
rs2486485	0.94[EUR][1000 genomes]
rs2590314	1.00[CEU][hapmap]
rs2590341	0.94[EUR][1000 genomes]
rs2590345	0.94[EUR][1000 genomes]
rs2590346	0.94[EUR][1000 genomes]
rs2590347	0.94[EUR][1000 genomes]
rs2590350	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2590362	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2790171	0.94[EUR][1000 genomes]
rs2790175	0.94[EUR][1000 genomes]
rs2790232	1.00[CEU][hapmap]
rs2790243	1.00[CEU][hapmap]
rs58063271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60414542	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286372	0.95[EUR][1000 genomes]
rs73286375	0.95[EUR][1000 genomes]
rs7907716	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907725	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946555	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9663811	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
UBE2D1	Distal transcriptional regulation
UBE2D1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)