SNP Report

Basic Infomation

Name	rs9663811 dbSNP
Location	chr:10,60096814
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509089	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250046	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1339581	0.94[EUR][1000 genomes]
rs1339587	1.00[CEU][hapmap]
rs1619597	1.00[CEU][hapmap]
rs16851	1.00[CEU][hapmap];0.83[MKK][hapmap];0.89[EUR][1000 genomes]
rs16912155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912160	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912172	1.00[CEU][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16912173	1.00[CEU][hapmap]
rs16912174	1.00[CEU][hapmap]
rs1856565	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2225987	0.94[EUR][1000 genomes]
rs2440852	0.94[EUR][1000 genomes]
rs2486485	0.94[EUR][1000 genomes]
rs2590314	1.00[CEU][hapmap]
rs2590341	0.94[EUR][1000 genomes]
rs2590345	0.94[EUR][1000 genomes]
rs2590346	0.94[EUR][1000 genomes]
rs2590347	0.94[EUR][1000 genomes]
rs2590350	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2590362	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2790171	0.94[EUR][1000 genomes]
rs2790175	0.94[EUR][1000 genomes]
rs2790232	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs2790243	1.00[CEU][hapmap]
rs58063271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60414542	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286372	0.95[EUR][1000 genomes]
rs73286375	0.95[EUR][1000 genomes]
rs7907716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907725	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946555	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TFAM	Distal transcriptional regulation
UBE2D1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)