SNP Report
Basic Infomation
| Name | rs2790171 dbSNP |
|---|---|
| Location | chr:10,60028935 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509089 | 0.94[EUR][1000 genomes] |
| rs12250046 | 0.94[EUR][1000 genomes] |
| rs1339581 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1339587 | 0.89[AMR][1000 genomes] |
| rs16851 | 0.94[EUR][1000 genomes] |
| rs16912155 | 0.94[EUR][1000 genomes] |
| rs16912160 | 0.94[EUR][1000 genomes] |
| rs16912171 | 0.94[EUR][1000 genomes] |
| rs1856565 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2225987 | 1.00[EUR][1000 genomes] |
| rs2440852 | 1.00[EUR][1000 genomes] |
| rs2486485 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590341 | 1.00[EUR][1000 genomes] |
| rs2590345 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590346 | 1.00[EUR][1000 genomes] |
| rs2590347 | 1.00[EUR][1000 genomes] |
| rs2590350 | 1.00[EUR][1000 genomes] |
| rs2590362 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2790175 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58063271 | 0.94[EUR][1000 genomes] |
| rs60414542 | 0.94[EUR][1000 genomes] |
| rs7080053 | 0.94[EUR][1000 genomes] |
| rs73286372 | 0.89[EUR][1000 genomes] |
| rs73286375 | 0.89[EUR][1000 genomes] |
| rs7907716 | 0.94[EUR][1000 genomes] |
| rs7907725 | 0.94[EUR][1000 genomes] |
| rs946555 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9663811 | 0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CISD1 | Proximal transcriptional regulation |
| IPMK | Proximal transcriptional regulation |
| TRA2B | Distal transcriptional regulation |
| ARF4 | Distal transcriptional regulation |
| TFAM | Distal transcriptional regulation |
| UBE2D1 | Distal transcriptional regulation |
| MFSD12 | Distal transcriptional regulation |
| HMG20B | Distal transcriptional regulation |
| CISD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014