SNP Report
Basic Infomation
| Name | rs2590312 dbSNP |
|---|---|
| Location | chr:10,59983784 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1339587 | 1.00[EUR][1000 genomes] |
| rs1619597 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1625716 | 0.85[AFR][1000 genomes] |
| rs1698473 | 0.83[AFR][1000 genomes] |
| rs2225987 | 1.00[AMR][1000 genomes] |
| rs2440859 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2486478 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590309 | 0.85[AFR][1000 genomes] |
| rs2590314 | 0.94[EUR][1000 genomes] |
| rs2590346 | 1.00[AMR][1000 genomes] |
| rs2590347 | 1.00[AMR][1000 genomes] |
| rs2590350 | 1.00[AMR][1000 genomes] |
| rs2790225 | 0.85[AFR][1000 genomes] |
| rs2790229 | 1.00[EUR][1000 genomes] |
| rs2790232 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2790234 | 0.85[AFR][1000 genomes] |
| rs2790243 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58706444 | 0.83[AFR][1000 genomes] |
| rs9416678 | 0.85[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IPMK | Distal transcriptional regulation |
| CISD1 | Distal transcriptional regulation |
| IPMK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014