SNP Report
Basic Infomation
| Name | rs1625716 dbSNP |
|---|---|
| Location | chr:10,59960083 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509088 | 0.95[ASN][1000 genomes] |
| rs11006087 | 0.95[ASN][1000 genomes] |
| rs12251970 | 0.97[ASN][1000 genomes] |
| rs12261547 | 0.97[ASN][1000 genomes] |
| rs12570088 | 0.93[ASN][1000 genomes] |
| rs12572236 | 0.95[ASN][1000 genomes] |
| rs1619597 | 0.88[AFR][1000 genomes] |
| rs2440859 | 0.89[AFR][1000 genomes] |
| rs2590312 | 0.85[AFR][1000 genomes] |
| rs2790232 | 0.86[AFR][1000 genomes] |
| rs2790243 | 0.87[AFR][1000 genomes] |
| rs58375950 | 0.97[ASN][1000 genomes] |
| rs60679872 | 0.97[ASN][1000 genomes] |
| rs61875332 | 0.97[ASN][1000 genomes] |
| rs61875333 | 0.97[ASN][1000 genomes] |
| rs7900114 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IPMK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014