SNP Report
Basic Infomation
| Name | rs12998880 dbSNP |
|---|---|
| Location | chr:2,61240882 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496090 | 0.82[GIH][hapmap];0.81[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes] |
| rs1177234 | 1.00[YRI][hapmap] |
| rs12464096 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12470271 | 0.85[AMR][1000 genomes] |
| rs12988616 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12996059 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12996153 | 0.86[TSI][hapmap] |
| rs13005116 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13014803 | 0.81[CEU][hapmap];0.86[TSI][hapmap] |
| rs13017457 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13026685 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17039790 | 1.00[YRI][hapmap] |
| rs2564114 | 0.83[LWK][hapmap];1.00[YRI][hapmap] |
| rs2698193 | 0.83[LWK][hapmap];1.00[YRI][hapmap] |
| rs35217978 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35780543 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35976602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3732173 | 1.00[JPT][hapmap] |
| rs4564760 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62150970 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62150977 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62150978 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6545842 | 1.00[JPT][hapmap] |
| rs6760104 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs72809436 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PEX13 | Proximal transcriptional regulation |
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| PUS10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014