SNP Report
Basic Infomation
| Name | rs12996153 dbSNP |
|---|---|
| Location | chr:2,61222736 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496090 | 0.92[CEU][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12470271 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12988616 | 0.86[TSI][hapmap] |
| rs12998880 | 0.86[TSI][hapmap] |
| rs13014803 | 0.84[GIH][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap] |
| rs34023434 | 0.80[TSI][hapmap] |
| rs34230978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35217978 | 0.80[MEX][hapmap];0.85[TSI][hapmap] |
| rs35230012 | 0.84[EUR][1000 genomes] |
| rs35852308 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62150966 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNA5SP95 | Proximal transcriptional regulation |
| PUS10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014