SNP Report
Basic Infomation
| Name | rs13014803 dbSNP |
|---|---|
| Location | chr:2,61167216 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496090 | 0.90[GIH][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap] |
| rs12464096 | 0.80[CEU][hapmap] |
| rs12988616 | 0.81[CEU][hapmap];0.86[TSI][hapmap] |
| rs12989427 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12996059 | 0.81[CEU][hapmap] |
| rs12996153 | 0.84[GIH][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap] |
| rs12998880 | 0.81[CEU][hapmap];0.86[TSI][hapmap] |
| rs13017457 | 0.81[CEU][hapmap] |
| rs13026050 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1821183 | 1.00[GIH][hapmap] |
| rs34023434 | 1.00[ASW][hapmap];0.90[TSI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35217978 | 0.81[CEU][hapmap];0.85[TSI][hapmap] |
| rs35230012 | 0.85[AMR][1000 genomes] |
| rs35742507 | 0.85[EUR][1000 genomes] |
| rs72807491 | 0.81[EUR][1000 genomes] |
| rs72809405 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7590126 | 0.91[GIH][hapmap] |
| rs7600065 | 0.91[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000232713 | Proximal transcriptional regulation |
| NONOP2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014