SNP Report
Basic Infomation
| Name | rs7590126 dbSNP |
|---|---|
| Location | chr:2,61032832 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13014803 | 0.91[GIH][hapmap] |
| rs13027673 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17538295 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1821183 | 0.84[CEU][hapmap];0.91[GIH][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];0.83[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35183708 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35469992 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55770917 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62149378 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62149379 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6704900 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6725719 | 0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7600065 | 0.84[CEU][hapmap];0.83[GIH][hapmap];0.93[MKK][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PAPOLG | Distal transcriptional regulation |
| RNA5SP95 | Distal transcriptional regulation |
| ENSG00000228414 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014