SNP Report
Basic Infomation
| Name | rs10496090 dbSNP |
|---|---|
| Location | chr:2,61254033 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12464096 | 0.85[AMR][1000 genomes] |
| rs12470271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12988616 | 0.82[GIH][hapmap];0.86[TSI][hapmap] |
| rs12996059 | 0.85[AMR][1000 genomes] |
| rs12996153 | 0.92[CEU][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12998880 | 0.82[GIH][hapmap];0.81[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes] |
| rs13005116 | 0.85[AMR][1000 genomes] |
| rs13014803 | 0.90[GIH][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap] |
| rs13017457 | 0.85[AMR][1000 genomes] |
| rs13026685 | 0.85[AMR][1000 genomes] |
| rs34023434 | 0.80[TSI][hapmap] |
| rs34230978 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35217978 | 0.82[GIH][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes] |
| rs35230012 | 0.81[EUR][1000 genomes] |
| rs35780543 | 0.85[AMR][1000 genomes] |
| rs35852308 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35976602 | 0.85[AMR][1000 genomes] |
| rs36064706 | 0.83[EUR][1000 genomes] |
| rs62150966 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62150977 | 0.85[AMR][1000 genomes] |
| rs72809436 | 0.85[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| PEX13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014