SNP Report

Basic Infomation

Name	rs1277603 dbSNP
Location	chr:5,150280562
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10035221	0.85[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10079642	0.86[JPT][hapmap]
rs11167525	0.85[CEU][hapmap]
rs11747403	0.82[CEU][hapmap]
rs11949556	0.91[JPT][hapmap]
rs12656542	0.85[CEU][hapmap]
rs13359144	0.82[EUR][1000 genomes]
rs1382319	0.88[CEU][hapmap]
rs1382322	0.89[CEU][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs1478388	0.85[CEU][hapmap]
rs1478392	0.89[CEU][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs1478393	0.83[EUR][1000 genomes]
rs1478394	0.87[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs1531541	0.85[CEU][hapmap]
rs1531543	0.89[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111502	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17800981	0.85[EUR][1000 genomes]
rs2086120	0.89[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2112637	0.87[JPT][hapmap]
rs2344177	0.85[EUR][1000 genomes]
rs2434688	0.81[CEU][hapmap]
rs2447790	0.85[ASN][1000 genomes]
rs4599525	0.87[JPT][hapmap]
rs4958427	0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4958846	0.87[JPT][hapmap]
rs4958851	0.85[CEU][hapmap]
rs59941025	0.84[EUR][1000 genomes]
rs6579807	0.91[ASN][1000 genomes]
rs6579814	0.89[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs6579815	0.88[EUR][1000 genomes]
rs6579816	0.87[EUR][1000 genomes]
rs6579818	0.81[CEU][hapmap]
rs6579819	0.89[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs6579820	0.85[CEU][hapmap]
rs66490017	0.85[EUR][1000 genomes]
rs6864895	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6868828	0.85[CEU][hapmap]
rs6869441	0.85[CEU][hapmap]
rs6882830	0.89[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6888154	0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6889238	0.82[EUR][1000 genomes]
rs6895296	0.84[EUR][1000 genomes]
rs7711212	0.89[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs7727919	0.85[CEU][hapmap]
rs7733619	0.81[CEU][hapmap]
rs7736885	0.88[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF300	Distal transcriptional regulation
ZNF300	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)