SNP Report
Basic Infomation
| Name | rs6895296 dbSNP |
|---|---|
| Location | chr:5,150330219 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1277603 | 0.84[EUR][1000 genomes] |
| rs13359144 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1382322 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1478392 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1478393 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1478394 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1531543 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17111502 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17800981 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2086120 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2344177 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2447790 | 0.90[ASN][1000 genomes] |
| rs59941025 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6579807 | 0.80[ASN][1000 genomes] |
| rs6579814 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6579815 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6579816 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6579819 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs66490017 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6864895 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6882830 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6889238 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7711212 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7736885 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF300P1 | Proximal transcriptional regulation |
| ZNF300 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014