SNP Report

Basic Infomation

Name	rs4958851 dbSNP
Location	chr:5,150327519
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10515643	0.82[JPT][hapmap]
rs10875562	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11167525	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11740915	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11744292	0.85[EUR][1000 genomes]
rs11747403	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12521445	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12653571	0.82[JPT][hapmap]
rs12656542	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12656603	0.83[JPT][hapmap]
rs1277603	0.85[CEU][hapmap]
rs13189259	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1382319	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1382322	0.89[CEU][hapmap]
rs1478388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1478389	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1478391	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1478392	0.89[CEU][hapmap]
rs1478394	0.87[CEU][hapmap]
rs1531541	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1531542	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1531543	0.89[CEU][hapmap]
rs1600153	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1600154	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17658199	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17714586	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17800771	0.82[JPT][hapmap]
rs17800777	0.82[JPT][hapmap]
rs1947773	0.82[JPT][hapmap]
rs2086120	0.89[CEU][hapmap]
rs2290989	0.82[JPT][hapmap]
rs2434688	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs4591738	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4958850	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6579808	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6579809	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6579814	0.89[CEU][hapmap]
rs6579817	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6579818	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6579819	0.89[CEU][hapmap]
rs6579820	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6868828	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6869441	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870008	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6882830	0.89[CEU][hapmap]
rs6883738	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884120	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884351	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6888604	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6893670	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6898641	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7711212	0.89[CEU][hapmap]
rs7727919	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7733619	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7736885	0.88[CEU][hapmap]
rs964071	0.80[EUR][1000 genomes]
rs964072	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF300P1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)