SNP Report

Basic Infomation

Name	rs2434688 dbSNP
Location	chr:5,150287656
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875562	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11167525	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11740915	0.93[ASN][1000 genomes]
rs11747403	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12521445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12656542	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277603	0.81[CEU][hapmap]
rs13189259	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1382319	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1478388	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1478389	0.99[ASN][1000 genomes]
rs1478391	0.94[ASN][1000 genomes]
rs1531541	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1531542	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1545752	0.83[EUR][1000 genomes]
rs1600153	0.99[ASN][1000 genomes]
rs1600154	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17658199	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17714586	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4591738	0.94[ASN][1000 genomes]
rs4958850	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4958851	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs6579808	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6579809	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6579817	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6579818	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6579820	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6868828	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6869441	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6870008	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6883738	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6884120	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6884351	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6888604	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6893670	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6898641	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7727919	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7733619	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs964072	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF300	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)