SNP Report

Basic Infomation

Name	rs4958846 dbSNP
Location	chr:5,150225138
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10035221	0.86[CHB][hapmap];0.96[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10051804	0.89[AFR][1000 genomes]
rs10051924	0.89[AFR][1000 genomes]
rs10058821	0.86[AFR][1000 genomes]
rs10058943	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs10059011	0.86[YRI][hapmap]
rs10061956	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10065172	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs10067831	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10069671	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11167514	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11748151	0.88[AFR][1000 genomes]
rs11748158	0.88[AFR][1000 genomes]
rs11949556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277603	0.87[JPT][hapmap]
rs13361189	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs1382322	0.82[JPT][hapmap]
rs1531543	0.82[JPT][hapmap]
rs17111376	0.89[AFR][1000 genomes]
rs2004711	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs2086120	0.82[JPT][hapmap]
rs2112637	0.93[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34005003	0.90[AFR][1000 genomes]
rs34156253	0.86[AFR][1000 genomes]
rs35707106	0.90[AFR][1000 genomes]
rs4599525	0.93[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4958423	0.86[AFR][1000 genomes]
rs4958424	0.90[AFR][1000 genomes]
rs4958427	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958843	0.88[AFR][1000 genomes]
rs58398445	0.85[AFR][1000 genomes]
rs59283234	0.90[AFR][1000 genomes]
rs61270113	0.83[AFR][1000 genomes]
rs6579807	0.85[EUR][1000 genomes]
rs6579814	0.82[JPT][hapmap]
rs66536655	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888154	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73282255	0.90[AFR][1000 genomes]
rs751627	0.90[AFR][1000 genomes]
rs7736885	0.83[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
IRGM	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)