SNP Report
Basic Infomation
| Name | rs12050393 dbSNP |
|---|---|
| Location | chr:14,68130536 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 81)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459532 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1059238 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1120877 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11620761 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11622441 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11623700 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11623711 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11623785 | 1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11623961 | 1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11624498 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11624868 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11625839 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11627201 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11628860 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1555193 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17104490 | 0.82[ASW][hapmap];0.83[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs17104526 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17104544 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17104550 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17104597 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17249472 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17852293 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1955469 | 0.81[MEX][hapmap] |
| rs1955472 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1955473 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2234511 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2320029 | 0.92[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28390085 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs28873201 | 0.87[EUR][1000 genomes] |
| rs3742880 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3742881 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3742882 | 0.81[MEX][hapmap] |
| rs3742883 | 0.81[MEX][hapmap] |
| rs4899221 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs4899222 | 1.00[ASW][hapmap];0.83[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4902506 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4902508 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4902511 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4902512 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs55900323 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs56244142 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56256221 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs60581344 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6573790 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7140310 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.99[EUR][1000 genomes] |
| rs7142897 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7144076 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7144124 | 0.83[EUR][1000 genomes] |
| rs7144186 | 0.83[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs7144243 | 0.90[CHD][hapmap] |
| rs7148327 | 0.83[CEU][hapmap] |
| rs7151205 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7151230 | 0.83[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs7152326 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7155788 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7159889 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72721082 | 0.86[EUR][1000 genomes] |
| rs72721090 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72723111 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72723115 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72723122 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72723126 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72723137 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72723144 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72723150 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs72723156 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72723158 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72723160 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72723163 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72723166 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72723167 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs742867 | 0.82[LWK][hapmap] |
| rs761513 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs761514 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8009250 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs8013767 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8017147 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs8017326 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs8019831 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs8020591 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs932475 | 0.81[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VTI1B | Proximal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014