SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11623700	0.82[LWK][hapmap]
rs11625742	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12050393	0.82[LWK][hapmap]
rs17104544	0.82[LWK][hapmap]
rs17104681	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs17104689	1.00[JPT][hapmap]
rs17104700	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1955469	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs1961561	1.00[ASN][1000 genomes]
rs3742880	0.82[LWK][hapmap]
rs3742882	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3742883	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs3742884	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs3742885	0.85[GIH][hapmap]
rs4899222	0.82[LWK][hapmap]
rs4899229	1.00[JPT][hapmap]
rs4902523	0.85[GIH][hapmap]
rs4902530	1.00[JPT][hapmap]
rs4902531	1.00[JPT][hapmap]
rs7141203	1.00[JPT][hapmap]
rs7143521	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs7150860	1.00[JPT][hapmap]
rs7156492	1.00[JPT][hapmap]
rs761513	0.82[LWK][hapmap]
rs8012665	1.00[JPT][hapmap]
rs8013767	0.82[LWK][hapmap]
rs8017930	1.00[JPT][hapmap]
rs932475	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs9788517	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ZFYVE26	Proximal transcriptional regulation
ZFYVE26	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)