SNP Report
Basic Infomation
| Name | rs7144243 dbSNP |
|---|---|
| Location | chr:14,68074432 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11623700 | 0.90[CHD][hapmap] |
| rs11624868 | 0.83[ASN][1000 genomes] |
| rs11625839 | 0.80[ASN][1000 genomes] |
| rs12050393 | 0.90[CHD][hapmap] |
| rs17104490 | 0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1885042 | 0.84[CEU][hapmap] |
| rs3742878 | 0.93[CEU][hapmap] |
| rs3759757 | 0.83[CEU][hapmap] |
| rs56256221 | 0.83[ASN][1000 genomes] |
| rs6573788 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs6573790 | 0.85[CHD][hapmap] |
| rs7151230 | 0.88[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs72721082 | 0.97[ASN][1000 genomes] |
| rs72721090 | 0.83[ASN][1000 genomes] |
| rs8012815 | 0.84[CEU][hapmap];0.81[TSI][hapmap] |
| rs8013767 | 0.90[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259502 | Proximal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| APP | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014