SNP Report

Basic Infomation

Name	rs17104490 dbSNP
Location	chr:14,68080560
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459532	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs1059238	0.83[CEU][hapmap];0.95[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs1120877	0.83[CEU][hapmap]
rs11622441	0.86[EUR][1000 genomes]
rs11623700	0.82[ASW][hapmap];0.83[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs11623785	0.83[CEU][hapmap]
rs11623961	0.83[CEU][hapmap]
rs11624498	0.86[EUR][1000 genomes]
rs11624868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11625839	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11628860	0.86[EUR][1000 genomes]
rs12050393	0.82[ASW][hapmap];0.83[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1555193	0.83[CEU][hapmap];0.95[GIH][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap]
rs17104526	0.84[EUR][1000 genomes]
rs17104544	0.83[CEU][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs17104550	0.85[EUR][1000 genomes]
rs17249472	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs2234511	0.86[EUR][1000 genomes]
rs2320029	0.95[GIH][hapmap]
rs28390085	0.83[EUR][1000 genomes]
rs3742880	0.82[ASW][hapmap];0.83[CEU][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs3742881	0.82[ASW][hapmap];0.95[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs4899222	0.82[ASW][hapmap];0.91[GIH][hapmap];0.86[LWK][hapmap]
rs4902506	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs4902508	0.88[EUR][1000 genomes]
rs56083029	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56244142	0.88[EUR][1000 genomes]
rs56256221	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573790	0.91[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7140310	0.83[CEU][hapmap];0.95[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs7142897	0.88[EUR][1000 genomes]
rs7144186	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs7144243	0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7148327	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs7151205	0.86[EUR][1000 genomes]
rs7151230	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152326	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7155788	0.83[EUR][1000 genomes]
rs72721082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721090	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72723111	0.86[EUR][1000 genomes]
rs72723115	0.86[EUR][1000 genomes]
rs72723122	0.88[EUR][1000 genomes]
rs72723126	0.88[EUR][1000 genomes]
rs72723137	0.88[EUR][1000 genomes]
rs72723144	0.88[EUR][1000 genomes]
rs761513	0.82[ASW][hapmap];0.83[CEU][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs761514	0.86[EUR][1000 genomes]
rs8009250	0.85[EUR][1000 genomes]
rs8013767	0.82[ASW][hapmap];0.83[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs8020591	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000259648	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
ZBTB1	SCAN
C14orf162	SCAN