SNP Report
Basic Infomation
| Name | rs7148327 dbSNP |
|---|---|
| Location | chr:14,68071772 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459532 | 0.83[CEU][hapmap] |
| rs1059238 | 0.83[CEU][hapmap] |
| rs1120877 | 0.83[CEU][hapmap] |
| rs11623700 | 0.83[CEU][hapmap] |
| rs11623785 | 0.83[CEU][hapmap] |
| rs11623961 | 0.83[CEU][hapmap] |
| rs11624868 | 0.83[AMR][1000 genomes] |
| rs12050393 | 0.83[CEU][hapmap] |
| rs1555193 | 0.83[CEU][hapmap] |
| rs17104490 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs17104544 | 0.83[CEU][hapmap] |
| rs17249472 | 0.83[CEU][hapmap] |
| rs2235962 | 0.83[JPT][hapmap] |
| rs2295108 | 0.83[JPT][hapmap] |
| rs3742880 | 0.83[CEU][hapmap] |
| rs4899214 | 0.84[GIH][hapmap] |
| rs4902506 | 0.83[CEU][hapmap] |
| rs6573790 | 0.91[CEU][hapmap] |
| rs7140310 | 0.83[CEU][hapmap] |
| rs7144186 | 0.81[CEU][hapmap] |
| rs7151230 | 1.00[CEU][hapmap] |
| rs7152326 | 0.91[CEU][hapmap] |
| rs7160196 | 0.82[JPT][hapmap] |
| rs72721082 | 0.83[AMR][1000 genomes] |
| rs761513 | 0.83[CEU][hapmap] |
| rs8013767 | 0.83[CEU][hapmap] |
| rs8020591 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PIGH | Proximal transcriptional regulation |
| ENSG00000259502 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014