SNP Report
Basic Infomation
| Name | rs11830472 dbSNP |
|---|---|
| Location | chr:12,50054470 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11831670 | 1.00[AFR][1000 genomes] |
| rs11831673 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs11832420 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs11832727 | 1.00[GIH][hapmap];1.00[YRI][hapmap] |
| rs11833472 | 0.93[AFR][1000 genomes] |
| rs11835085 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs11837637 | 1.00[GIH][hapmap];1.00[YRI][hapmap] |
| rs12320434 | 1.00[CHD][hapmap] |
| rs2720299 | 1.00[CHD][hapmap] |
| rs3861577 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs56840810 | 0.90[AFR][1000 genomes] |
| rs57489906 | 0.90[AFR][1000 genomes] |
| rs59576871 | 0.83[AFR][1000 genomes] |
| rs7310069 | 0.90[AFR][1000 genomes] |
| rs7313183 | 1.00[YRI][hapmap] |
| rs7960185 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs7973011 | 0.87[AFR][1000 genomes] |
| rs7978381 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FMNL3 | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014