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rVarBase
SNP Report
Basic Infomation
Name
rs56840810  
dbSNP
Location
chr:12,50029880
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11830472
0.90[AFR][1000 genomes]
rs11831670
0.90[AFR][1000 genomes]
rs11831673
0.90[AFR][1000 genomes]
rs11832420
0.96[AFR][1000 genomes]
rs11833472
0.96[AFR][1000 genomes]
rs11835085
0.90[AFR][1000 genomes]
rs3861577
0.93[AFR][1000 genomes]
rs57489906
0.93[AFR][1000 genomes]
rs7310069
0.93[AFR][1000 genomes]
rs7960185
0.93[AFR][1000 genomes]
rs7973011
0.90[AFR][1000 genomes]
rs7978381
0.90[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PRPF40B
Proximal transcriptional regulation
TMBIM6
Distal transcriptional regulation
PRPF40B
Distal transcriptional regulation
HIGD1AP9
Distal transcriptional regulation
SRD5A3-AS1
Distal transcriptional regulation
TMEM165
Distal transcriptional regulation
PRPF40B
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)