SNP Report
Basic Infomation
| Name | rs11833472 dbSNP |
|---|---|
| Location | chr:12,50033760 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11830472 | 0.93[AFR][1000 genomes] |
| rs11831007 | 0.82[AFR][1000 genomes] |
| rs11831670 | 0.93[AFR][1000 genomes] |
| rs11831673 | 0.93[AFR][1000 genomes] |
| rs11832420 | 1.00[AFR][1000 genomes] |
| rs11835085 | 0.93[AFR][1000 genomes] |
| rs11837637 | 0.82[AFR][1000 genomes] |
| rs3861577 | 0.96[AFR][1000 genomes] |
| rs56840810 | 0.96[AFR][1000 genomes] |
| rs57489906 | 0.96[AFR][1000 genomes] |
| rs7310069 | 0.96[AFR][1000 genomes] |
| rs7960185 | 0.96[AFR][1000 genomes] |
| rs7973011 | 0.93[AFR][1000 genomes] |
| rs7978381 | 0.93[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Proximal transcriptional regulation |
| FMNL3 | Proximal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| FMNL3 | Distal transcriptional regulation |
| ENSG00000257570 | Distal transcriptional regulation |
| HIGD1AP9 | Distal transcriptional regulation |
| PRPF40B | RNA binding protein mediated regulation |
| FMNL3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014